Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5855104-SRR5855105/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  105,751,413
 Normal Paired: 88,131,602 (83.34%)
 Chimeric Paired: 3,505 (0.00%)
 Chimeric Ambiguous: 7,189 (0.01%)
 Unmapped: 17,609,117 (16.65%)
 Ligation Motif Present: 13,881 (0.01%)
Alignable (Normal+Chimeric Paired): 88,135,107 (83.34%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-04T04:23:56,501]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 77,044,485 (72.85%)
PCR Duplicates: 11,090,622 (10.49%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 320,156,946
Intra-fragment Reads: 10,696,031 (10.11% / 13.88%)
Below MAPQ Threshold: 14,416,961 (13.63% / 18.71%)
Hi-C Contacts: 51,931,493 (49.11% / 67.40%)
 Ligation Motif Present: 8,540  (0.01% / 0.01%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,499,897  (9.93% / 13.63%)
Intra-chromosomal: 41,431,596  (39.18% / 53.78%)
Short Range (<20Kb): 9,147,912  (8.65% / 11.87%)
Long Range (>20Kb): 32,283,636  (30.53% / 41.90%)